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Our research

We seek to understand how gene expression is regulated in animalsOur lab applies genetics, biochemistry, high-throughput sequencing, and computational modeling to define the biological roles of small RNAs and other post-transcriptional mechanisms in development and disease.

Selected publications

Divergent regulatory impacts of endogenous siRNAs on host mRNAs in testis of closely related species

Zamani M, Jarva T, Moukheiber H, Kloss-Schmidt A, Ajaykumar N, Lin CJ, Chalouh-Hara B, Moskowitz A, Steinhauer J, Lai EC, Gainetdinov I

bioRxiv 2026; doi.org/10.64898/2026.05.18.725984

Cleavage of mRNAs by a minority of pachytene piRNAs improves sperm fitness

Cecchini K, Zamani M, Ajaykumar N, Vega-Badillo J, Bagci A, Bailey S, Zamore PD, Gainetdinov I

Nature 2026; 652: 508–516

Absolute Quantification of Mammalian MicroRNAs for Therapeutic RNA Cleavage and Detargeting

Kraus C, Wang J, Zheng H, Broderick J, Ajaykumar N, Zamani M, Mengqi Y, Cecchini K, Liang SQ, Kolumba O, Chase K, Lee J, Xue W, Sontheimer E, Gainetdinov I

RNA 2025; 31:1081-1090

Relaxed targeting rules help PIWI proteins silence transposons

Gainetdinov I, Vega-Badillo J, Cecchini K, Bagci A, Colpan C, De D, Bailey S, Arif A, Wu PH, MacRae IJ, Zamore PD

Nature 2023; 619: 394–402

A maternally programmed intergenerational mechanism enables male offspring to make piRNAs from Y-linked precursor RNAs in Drosophila

Venkei ZG*, Gainetdinov I*, Bagci A, Starostik MR, Choi CP, Fingerhut JM, Chen P, Balsara C, Whitfield TW, Bell GW, Feng S, Jacobsen SE, Aravin AA, Kim JK, Zamore PD, Yamashita YM. *co-first authors

Nat Cell Biol 2023; 25:1495–1505

Terminal modification, sequence, length, and PIWI-protein identity determine piRNA stability

Gainetdinov I, Colpan C, Cecchini K, Arif A, Jouravleva K, Albosta P, Vega-Badillo J, Lee Y, Özata DM, Zamore PD

Mol Cell 2021; 81: 4826–4842

A Single Mechanism of Biogenesis, Initiated and Directed by PIWI Proteins, Explains piRNA Production in Most Animals

Gainetdinov I*, Colpan C*, Arif A, Cecchini K, Zamore PD. *co-first authors
Mol Cell 2018; 71: 775-790

Ildar Gainetdinov

Department of Biology

College of Arts and Science

New York University

Address:

29 Washington Place
7th Floor, Rm 753
New York, NY 10003

 

Tel: +1-212-998-3911

Email: ildar.gainetdinov@nyu.edu

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